basic local alignment sequence tools Search Results


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Biotechnology Information basic local alignment search tool protein
Basic Local Alignment Search Tool Protein, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biotechnology Information basic local alignment sequence tool (blastn) search engine
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Basic Local Alignment Sequence Tool (Blastn) Search Engine, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biotechnology Information basic local alignment search tool for nucleotide sequences
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Basic Local Alignment Search Tool For Nucleotide Sequences, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biotechnology Information tblastn (protein query sequence against translated nucleotide database) protocol blast (basic local alignment search tool)
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Tblastn (Protein Query Sequence Against Translated Nucleotide Database) Protocol Blast (Basic Local Alignment Search Tool), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biotechnology Information sequence search tool (nucleotide-nucleotide basic local alignment search tool search)
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Sequence Search Tool (Nucleotide Nucleotide Basic Local Alignment Search Tool Search), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Applica Consumer Products mapping single molecule sequencing reads using basic local alignment with successive refinement (blasr)
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Mapping Single Molecule Sequencing Reads Using Basic Local Alignment With Successive Refinement (Blasr), supplied by Applica Consumer Products, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Amgen basic local alignment sequence tool (tblastn)
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Basic Local Alignment Sequence Tool (Tblastn), supplied by Amgen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biotechnology Information basic local alignment sequence techniques (blastn) algorithm
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Basic Local Alignment Sequence Techniques (Blastn) Algorithm, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biotechnology Information basic local alignment sequence test (blast)
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Basic Local Alignment Sequence Test (Blast), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biotechnology Information basic local alignment search tool sequence query for svsvgmkpsprp
Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and <t>GenBank</t> sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup
Basic Local Alignment Search Tool Sequence Query For Svsvgmkpsprp, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and GenBank sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup

Journal: Parasites & Vectors

Article Title: Microfluidic PCR and network analysis reveals complex tick-borne pathogen interactions in the tropics

doi: 10.1186/s13071-023-06098-0

Figure Lengend Snippet: Phylogenetic tree of selected representatives of Babesia sp. inferred from 18S rRNA. The evolutionary history was inferred by using the maximum likelihood method and the Tamura 3-parameter model. The analysis contains Babesia vogeli 18S rRNA sequences identified in the current study (bold and marked red dots) and GenBank sequences. Accession numbers of sequences, host species, and country of origin are displayed. Bootstrap values are represented as per cent of internal branches (1000 replicates); values < 50 are hidden. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. This analysis involved 23 nucleotide sequences. There were a total of 410 positions in the final dataset. Sequences AF176835 and EU289222 were used as outgroup

Article Snippet: Subsequently, these sequences were analysed to identify the targeted TBPs by conducting a search against the GenBank database using the Basic Local Alignment Sequence Tool (BLASTn) search engine ( http://blast.ncbi.nlm.nih.gov/Blast.cgi ) [ ] provided by the National Center for Biotechnology Information (NCBI, Bethesda, MD, USA).

Techniques:

Sequencing analyses of the gene fragments amplified for TBPs species detected in blood samples and Rhipicephalus sanguineus s.l. tick species collected from domestic dogs ( Canis lupus familiaris ) in Cuba

Journal: Parasites & Vectors

Article Title: Microfluidic PCR and network analysis reveals complex tick-borne pathogen interactions in the tropics

doi: 10.1186/s13071-023-06098-0

Figure Lengend Snippet: Sequencing analyses of the gene fragments amplified for TBPs species detected in blood samples and Rhipicephalus sanguineus s.l. tick species collected from domestic dogs ( Canis lupus familiaris ) in Cuba

Article Snippet: Subsequently, these sequences were analysed to identify the targeted TBPs by conducting a search against the GenBank database using the Basic Local Alignment Sequence Tool (BLASTn) search engine ( http://blast.ncbi.nlm.nih.gov/Blast.cgi ) [ ] provided by the National Center for Biotechnology Information (NCBI, Bethesda, MD, USA).

Techniques: Sequencing, Amplification